Ho affrontato il problema dell'utilizzo di semplici comandi di shell come AWK e di stampare all'interno dei miei script sh sul mio Mac (lo stesso script funziona perfettamente su Linux). Ad esempio, sotto lo script che cerca le colonne all'interno di determinati file di input non funziona
#! /usr/bin/env bash
input=/Users/Own/Documents/Science/mmgbsa_results/All_decomp2/logs
output=/Users/Own/Documents/Science/mmgbsa_results/All_decomp2/out
for file in $input/*; do
title=$(basename "$file")
#print $title
awk -F’[|]’ '{print $1,$NF}' $file > ${output}/$title
done
uscita:
awk: no program given
analysis.sh: line 11: ]’: command not found
awk: no program given
analysis.sh: line 11: ]’: command not found
awk: no program given
analysis.sh: line 11: ]’: command not found
awk: no program given
analysis.sh: line 11: ]’: command not found
awk: no program given
analysis.sh: line 11: ]’: command not found
awk: no program given
Ecco alcuni test della shell:
Glebs-MacBook-Pro:All_decomp2 Own$ echo $PATH
/Users/Own/anaconda/bin:/Library/Frameworks/Python.framework/Versions/2.7/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
Glebs-MacBook-Pro:All_decomp2 Own$ awk
usage: awk [-F fs] [-v var=value] [-f progfile | 'prog'] [file ...]
Glebs-MacBook-Pro:All_decomp2 Own$ peint
-bash: peint: command not found