Cerco di fare e ottenere:
Makefile:81: "*** WARNING g++ minor version <7 ***"
mkdir -p obj_linux/codebase/spoa/src/
g++ -static-libgcc -static-libstdc++ -D__cplusplus=201103L -I"./src/" -I"/usr/include/" -Icodebase/argparser/src -Icodebase/seqlib/src -Icodebase/samscripts/src -Icodebase/spoa/src -O3 -fdata-sections ->ffunction-ections -c -fmessage-length=0 -ffreestanding -fopenmp -m64 ->std=c++11 -error=return-type -pthread -march=native -o obj_linux/codebase/spoa/src/alignment.o codebase/spoa/src/alignment.cpp
clang: error: unsupported option '-fopenmp'
make: *** [obj_linux/codebase/spoa/src/alignment.o] Error 1
lahmersk-iml13:racon lahmersk$ whereis g++
/usr/bin/g++
Ho un'installazione casalinga di 7.3 su / usr / local / Cellar / gcc
Ho provato ad esportare PATH in .bash_profile con:
# gcc location
export PATH=/usr/local/Cellar/gcc:$PATH
La mia directory Cellar ha:
lahmersk-iml13:Cellar lahmersk$ ls
aragorn gdbm libmpc parallel sqlite
barrnap gmp llvm prodigal tbl2asn
blast hmmer lmdb prokka xz
cmake infernal minced python3
eigen isl mpfr qt
gcc libffi openssl readline
e gcc è:
lahmersk-iml13:Cellar lahmersk$ cd gcc
lahmersk-iml13:gcc lahmersk$ ls
7.3.0
Il mio file bash_profilo corrente è:
# Homebrew location
export PATH=/usr/local/bin:/usr/local/sbin:$PATH
# Centrifuge location
export PATH=/Users/lahmersk/centrifuge:$PATH
# Spades location
export PATH=/Users/lahmersk/SPAdes-3.11.1-Darwin/bin:$PATH
# Bowtie2 location
export PATH=/Users/lahmersk/bowtie2-2.3.4.1:$PATH
# Pilon location
export PATH=/Users/lahmersk/pilon-1.21:$PATH
# Prokka location
export PATH=/Users/lahmersk/prokka/bin:$PATH
# Barrnap location
export PATH=/Users/lahmersk/barrnap/bin:$PATH
# gcc location
export PATH=/usr/local/Cellar/gcc:$PATH
quando eseguo sudo vi / etc / paths ottengo:
/usr/local/bin
/usr/bin
/bin
/usr/sbin
/sbin
Potrei usare un po 'di assistenza. Quali altre informazioni posso fornire?